All of Us Researcher Workbench
The All of Us Researcher Workbench is a cloud-based platform where registered researchers can access Registered and Controlled Tier data. Its powerful tools support data analysis and collaboration.
Tools
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Anaconda Navigator
Anaconda is an easy-to-install free package manager, environment manager, Python distribution, and collection of over 720 open source packages offering free community support.
ArcGIS
A geographic information system for working with maps and geographic information maintained by the Environmental Systems Research Institute.
Archive-It
Created by Internet Archive, Archive-It provides web archiving products and services.
Babelmesh
Search MEDLINE/PubMed using medical terms or phrases in Arabic, Chinese, English, French, German, Italian, Japanese, Korean, Portuguese, Russian, and Spanish.
BioProject
A BioProject is a collection of biological data related to a single initiative originating from a single organization or from a consortium.
Comparative Genomics Resource
The National Institutes of Health's Comparative Genomics Resource facilitates research into eukaryotic organisms and their genomic data through community collaboration and an NCBI Toolkit of interconnected and interoperable datasets and tools.
Covidence
Covidence is web-based software tool that allows to streamline production of systematic reviews.
Diagnosaurus 4.0
Zeiger Roni F, McGraw-Hill's Diagnosaurus 4.0
All differential diagnoses, by symptom, by disease, by organ system.
Some of the material in this work has been derived from Papadakis MA, McPhee SJ, eds, Quick Medical Diagnosis and Treatment 2014. New York, NY: McGraw-Hill Education; 2014.
DMPTool
The DMPTool is a free open-source online application that helps researchers create data management and sharing plans (DMPs).
DNorm: Disease Named Entity Recognition and Normalization with Pairwise Learning to Rank
DNorm is an automated method for determining which diseases are mentioned in biomedical text, the task of disease normalization. Diseases have a central role in many lines of biomedical resear
EndNote
EndNote is a commercial reference management software designed to help researchers store, organize, and manage citations and bibliographies.
GNormPlus: An Integrative Approach for Tagging Gene, Gene Family and Protein Domain
GNormPlus: an end-to-end system that handles both gene/protein name and identifier detection in biomedical literature, including gene/protein mentions, family names and domain names.
Journal /Author Name Estimator (JANE)
Jane first searches for the 50 articles that are most similar to your input. For each of these articles, a similarity score between that article and your input is calculated.
LabArchives
LabArchives is an Electronic Research Notebook service for researchers, instructors, and students. This service helps organize and store laboratory data, provides information sharing
LitCovid
LitCovid is the most comprehensive resource on the subject, providing a central access to 418,410 (and growing ) relevant articles in PubMed.
LitVar
LitVar is a semantic search engine for linking genomic variant data in PubMed and PMC.
Mendeley Reference Manager
Mendeley is a free reference manager and academic social network that serves as an information system to support research.
MeSH (Medical Subject Headings) Database
MeSH (Medical Subject Headings) is the NLM controlled vocabulary thesaurus used for indexing articles for PubMed.
NLM-Scrubber
NLM-Scrubber is a freely available clinical text deidentification tool designed and developed at the National Library of Medicine.
Open-i
Open-i service of the National Library of Medicine enables search and retrieval of abstracts and images (including charts, graphs, clinical images, etc.) from the open s
OpenAlex
OpenAlex is a free and open catalog of the global research system. It's named after the ancient Library of Alexandria and made by the nonprofit OurResearch.
PubTator3
PubTator3 is a text-mining tool for annotating the entire PubMed articles
Python
An interpreted and object-oriented programming language.
R, Statistical Computing
Free software environment for statistical computing and graphics
Read by QxMD
Free app and web service to read and keep up with published biomedical literature.
Sage Policy Profiles
Sage Policy Profiles is a free tool designed to track, visualize, and share a researcher's policy impact.
SAS
An integrated system of software products provided by the SAS Institute, Inc. that enables programmers to perform data entry, data management, statistical analysis, forecasting, quality i
SPSS
A computer program used for statistical analysis.
STATA
A general-purpose statistical software package with data management, statistical analysis, graphics, simulations, regression, and custom programming capabilities.
SWIFT Review
SWIFT-Review (SWIFT is an acronym for “Sciome Workbench for Interactive computer-Facilitated Text-mining”) is a freely available interactive workbench which provides numerous tools to assist with p
The COVID-19 Open Research Dataset (CORD-19)
CORD-19 is a corpus of academic papers about COVID-19 and related coronavirus research.
The Polyglot Search Translator
The Polyglot Search Translator can be used to view examples of a search and how the syntax would be be translated into different databases.
Think. Check. Submit.
Think. Check. Submit. helps researchers identify trusted journals and publishers for their research.
Yale MeSH Analyzer
Users can input up to 20 PubMed IDs (PMID) at a time to collect MeSH Subject Headings and Author Keywords for search development.
Zotero
Zotero is free and easy to use, web-based citation management tool.